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SRR5364308 Sample ID 648
| Paper identifier | Dukler2017nascent |
| SRP accession | SRP102240 |
| GEO accession | GSE96869 |
| Samples | SRR5364308 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | K562 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | celastrol (3 microM) | -20 min | 0 min | 20 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 25,865,034 |
| Duplication proportion | 0.24824 |
| Proportion reads mapped | 0.9199 |
| Exon/intron ratio | 3.46425 |
| Unique read proportion | 0.8152 |
| Total # Tfit bidirectionals | 24457 |
| # Promoter Tfit bidirectionals | 12375 |
| # Intronic Tfit bidirectionals | 9355 |
| # Intergenic Tfit bidirectionals | 3451 |
| Total # dREG bidirectionals | 20553 |
| # Promoter dREG bidirectionals | 8266 |
| # Intronic dREG bidirectionals | 8644 |
| # Intergenic dREG bidirectionals | 3502 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |