DBNascent | Samples

SRR5379790 Sample ID 440

**Data sources**
Paper identifier	Chen2017rchip
SRP accession	SRP102520
GEO accession	GSE97072
Samples	SRR5379790

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	46 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	424 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	40
Read depth after trimming	41,003,654
Duplication proportion	0.84933
Proportion reads mapped	0.8839
Exon/intron ratio	4.54233
Unique read proportion	0.16854

**Bidirectionals**
Total # Tfit bidirectionals	14068
# Promoter Tfit bidirectionals	8372
# Intronic Tfit bidirectionals	4662
# Intergenic Tfit bidirectionals	735
Total # dREG bidirectionals	9861
# Promoter dREG bidirectionals	6618
# Intronic dREG bidirectionals	2399
# Intergenic dREG bidirectionals	1019
Part of Tfit master merge?	True
Part of dREG master merge?	True