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SRR5379791 Sample ID 441
| Paper identifier | Chen2017rchip |
| SRP accession | SRP102520 |
| GEO accession | GSE97072 |
| Samples | SRR5379791 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 20 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 508 Kb |
| dREG bidirectional regions | BED file | 181 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEK293T |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 40 |
| Read depth after trimming | 16,127,914 |
| Duplication proportion | 0.88308 |
| Proportion reads mapped | 0.8216 |
| Exon/intron ratio | 4.42754 |
| Unique read proportion | 0.12066 |
| Total # Tfit bidirectionals | 5896 |
| # Promoter Tfit bidirectionals | 3934 |
| # Intronic Tfit bidirectionals | 1623 |
| # Intergenic Tfit bidirectionals | 257 |
| Total # dREG bidirectionals | 4227 |
| # Promoter dREG bidirectionals | 3333 |
| # Intronic dREG bidirectionals | 749 |
| # Intergenic dREG bidirectionals | 304 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |