DBNascent | Samples

SRR5379793 Sample ID 443

**Data sources**
Paper identifier	Chen2017rchip
SRP accession	SRP102520
GEO accession	GSE97072
Samples	SRR5379793

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	15 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	699 Kb
dREG bidirectional regions	BED file	319 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	DRB (100 microM)	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	40
Read depth after trimming	14,068,232
Duplication proportion	0.90953
Proportion reads mapped	0.7984
Exon/intron ratio	4.71277
Unique read proportion	0.09258

**Bidirectionals**
Total # Tfit bidirectionals	8087
# Promoter Tfit bidirectionals	4996
# Intronic Tfit bidirectionals	3047
# Intergenic Tfit bidirectionals	362
Total # dREG bidirectionals	7449
# Promoter dREG bidirectionals	5504
# Intronic dREG bidirectionals	1948
# Intergenic dREG bidirectionals	448
Part of Tfit master merge?	True
Part of dREG master merge?	True