DBNascent | Samples

SRR5388640 Sample ID 456

**Data sources**
Paper identifier	Chen2018augmented
SRP accession	SRP102697
GEO accession	GSE97183
Samples	SRR5388640

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	21 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	433 Kb
dREG bidirectional regions	BED file	160 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype	dox-inducible shRNA U2af35 endogenous (stable); dox-inducible U2af35 S34F exogenous (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (1 microg/mL)	-5 hr	0 hr	5 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	41
Read depth after trimming	11,601,902
Duplication proportion	0.76976
Proportion reads mapped	0.5718
Exon/intron ratio	2.87
Unique read proportion	0.22378

**Bidirectionals**
Total # Tfit bidirectionals	5004
# Promoter Tfit bidirectionals	3335
# Intronic Tfit bidirectionals	1469
# Intergenic Tfit bidirectionals	316
Total # dREG bidirectionals	3734
# Promoter dREG bidirectionals	2963
# Intronic dREG bidirectionals	659
# Intergenic dREG bidirectionals	293
Part of Tfit master merge?	True
Part of dREG master merge?	True