DBNascent | Samples

SRR5448821 Sample ID 809

**Data sources**
Paper identifier	Fong2017rna
SRP accession	SRP103940
GEO accession	GSE97827
Samples	SRR5448821

**Technical details**
QC score	3
Replicate	1
Protocol	NET-seq
Library prep	random primed
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	69 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	948 Kb
dREG bidirectional regions	BED file	132 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	tNET-seq
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	20
Read depth after trimming	32,281,299
Duplication proportion	0.67664
Proportion reads mapped	0.8814
Exon/intron ratio	3.16056
Unique read proportion	0.33685

**Bidirectionals**
Total # Tfit bidirectionals	10728
# Promoter Tfit bidirectionals	1704
# Intronic Tfit bidirectionals	5499
# Intergenic Tfit bidirectionals	961
Total # dREG bidirectionals	3055
# Promoter dREG bidirectionals	887
# Intronic dREG bidirectionals	1132
# Intergenic dREG bidirectionals	599
Part of Tfit master merge?	False
Part of dREG master merge?	False