DBNascent | Samples

SRR5448822 Sample ID 810

**Data sources**
Paper identifier	Fong2017rna
SRP accession	SRP103940
GEO accession	GSE97827
Samples	SRR5448822

**Technical details**
QC score	2
Replicate	2
Protocol	NET-seq
Library prep	random primed
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	80 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	989 Kb
dREG bidirectional regions	BED file	241 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	tNET-seq
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	35
Read depth after trimming	36,996,676
Duplication proportion	0.62614
Proportion reads mapped	0.9493
Exon/intron ratio	3.15242
Unique read proportion	0.41841

**Bidirectionals**
Total # Tfit bidirectionals	11217
# Promoter Tfit bidirectionals	2906
# Intronic Tfit bidirectionals	6060
# Intergenic Tfit bidirectionals	589
Total # dREG bidirectionals	5595
# Promoter dREG bidirectionals	2329
# Intronic dREG bidirectionals	2204
# Intergenic dREG bidirectionals	455
Part of Tfit master merge?	False
Part of dREG master merge?	False