DBNascent | Samples

SRR5448828 Sample ID 816

**Data sources**
Paper identifier	Fong2017rna
SRP accession	SRP103940
GEO accession	GSE97827
Samples	SRR5448828

**Technical details**
QC score	4
Replicate	2
Protocol	NET-seq
Library prep	random primed
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	61 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	176 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype
Construct	Rpb1 H1108Y

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	tNET-seq
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	151
Read depth after trimming	43,059,733
Duplication proportion	0.80407
Proportion reads mapped	0.9503
Exon/intron ratio	2.96471
Unique read proportion	0.21699

**Bidirectionals**
Total # Tfit bidirectionals	19169
# Promoter Tfit bidirectionals	3221
# Intronic Tfit bidirectionals	9773
# Intergenic Tfit bidirectionals	2060
Total # dREG bidirectionals	4074
# Promoter dREG bidirectionals	1533
# Intronic dREG bidirectionals	1530
# Intergenic dREG bidirectionals	534
Part of Tfit master merge?	False
Part of dREG master merge?	False