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SRR5448828 Sample ID 816
| Paper identifier | Fong2017rna |
| SRP accession | SRP103940 |
| GEO accession | GSE97827 |
| Samples | SRR5448828 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | NET-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 61 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 176 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEK293T |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | Rpb1 H1108Y |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | tNET-seq |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 151 |
| Read depth after trimming | 43,059,733 |
| Duplication proportion | 0.80407 |
| Proportion reads mapped | 0.9503 |
| Exon/intron ratio | 2.96471 |
| Unique read proportion | 0.21699 |
| Total # Tfit bidirectionals | 19169 |
| # Promoter Tfit bidirectionals | 3221 |
| # Intronic Tfit bidirectionals | 9773 |
| # Intergenic Tfit bidirectionals | 2060 |
| Total # dREG bidirectionals | 4074 |
| # Promoter dREG bidirectionals | 1533 |
| # Intronic dREG bidirectionals | 1530 |
| # Intergenic dREG bidirectionals | 534 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |