DBNascent | Samples

SRR5466770 Sample ID 604

**Data sources**
Paper identifier	Dorighi2017mll3
SRP	SRP104739
Samples	SRR5466770

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	101 Mb
Stranded gene read counts	TXT file	937 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	R1
Strain	129S1/SvImJ x 129X1/SvJ
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	51
Read depth after trimming	146,752,727
Duplication proportion	0.91738
Proportion reads mapped	0.7023
Exon/intron ratio	2.96903
Unique read proportion	0.35267

**Bidirectionals**
Total # Tfit bidirectionals	31542
# Promoter Tfit bidirectionals	6812
# Intronic Tfit bidirectionals	10734
# Intergenic Tfit bidirectionals	11336
Total # dREG bidirectionals	30349
# Promoter dREG bidirectionals	7723
# Intronic dREG bidirectionals	8688
# Intergenic dREG bidirectionals	12022
Part of Tfit master merge?	True
Part of dREG master merge?	True