Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR5466770 Sample ID 604
| Paper identifier | Dorighi2017mll3 |
| SRP accession | SRP104739 |
| GEO accession | GSE98063 |
| Samples | SRR5466770 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 forward |
| Reverse complemented? | True |
| Mapped strandedness | read1 forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 101 Mb |
| Stranded gene read counts | TXT file | 937 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | R1 |
| Strain | 129S1/SvImJ x 129X1/SvJ |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 146,752,727 |
| Duplication proportion | 0.91738 |
| Proportion reads mapped | 0.7023 |
| Exon/intron ratio | 2.96903 |
| Unique read proportion | 0.35267 |
| Total # Tfit bidirectionals | 31542 |
| # Promoter Tfit bidirectionals | 6812 |
| # Intronic Tfit bidirectionals | 10734 |
| # Intergenic Tfit bidirectionals | 11336 |
| Total # dREG bidirectionals | 30349 |
| # Promoter dREG bidirectionals | 7723 |
| # Intronic dREG bidirectionals | 8688 |
| # Intergenic dREG bidirectionals | 12022 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |