DBNascent | Samples

SRR5508393 Sample ID 1626

**Data sources**
Paper identifier	Liu2017dynamic
SRP accession	SRP106474
GEO accession	GSE98555
Samples	SRR5508393

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	125 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	hematopoietic progenitor cell
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	isolated from peripheral blood of healthy volunteers
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	75
Read depth after trimming	34,305,564
Duplication proportion	0.39246
Proportion reads mapped	0.9302
Exon/intron ratio	3.59496
Unique read proportion	0.7518

**Bidirectionals**
Total # Tfit bidirectionals	35635
# Promoter Tfit bidirectionals	15132
# Intronic Tfit bidirectionals	14122
# Intergenic Tfit bidirectionals	6715
Total # dREG bidirectionals	25845
# Promoter dREG bidirectionals	8453
# Intronic dREG bidirectionals	11123
# Intergenic dREG bidirectionals	5480
Part of Tfit master merge?	True
Part of dREG master merge?	True