DBNascent | Samples

SRR5508394 Sample ID 1627

**Data sources**
Paper identifier	Liu2017dynamic
SRP accession	SRP106474
GEO accession	GSE98555
Samples	SRR5508394

**Technical details**
QC score	1
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	137 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	hematopoietic progenitor cell
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	3rd control is untransfected but also labeled as control
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	76
Read depth after trimming	45,141,100
Duplication proportion	0.40551
Proportion reads mapped	0.7973
Exon/intron ratio	3.32429
Unique read proportion	0.7697

**Bidirectionals**
Total # Tfit bidirectionals	34003
# Promoter Tfit bidirectionals	14943
# Intronic Tfit bidirectionals	12880
# Intergenic Tfit bidirectionals	6835
Total # dREG bidirectionals	28168
# Promoter dREG bidirectionals	9299
# Intronic dREG bidirectionals	12494
# Intergenic dREG bidirectionals	6146
Part of Tfit master merge?	True
Part of dREG master merge?	True