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SRR5508396 Sample ID 1629
| Paper identifier | Liu2017dynamic |
| SRP accession | SRP106474 |
| GEO accession | GSE98555 |
| Samples | SRR5508396 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | hematopoietic progenitor cell |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | G-CSF (10 ng/mL) | -1 day | 0 day | 1 day |
| Pipeline info and software versions | |
| Sample notes | other differentiation media changes 3 days before extraction; isolated from peripheral blood of healthy volunteers |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 35,686,207 |
| Duplication proportion | 0.74332 |
| Proportion reads mapped | 0.7028 |
| Exon/intron ratio | 3.35943 |
| Unique read proportion | 0.43554 |
| Total # Tfit bidirectionals | 18185 |
| # Promoter Tfit bidirectionals | 4279 |
| # Intronic Tfit bidirectionals | 9904 |
| # Intergenic Tfit bidirectionals | 2897 |
| Total # dREG bidirectionals | 14215 |
| # Promoter dREG bidirectionals | 5764 |
| # Intronic dREG bidirectionals | 6200 |
| # Intergenic dREG bidirectionals | 2214 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |