DBNascent | Samples

SRR5508399 Sample ID 1632

**Data sources**
Paper identifier	Liu2017dynamic
SRP accession	SRP106474
GEO accession	GSE98555
Samples	SRR5508399

**Technical details**
QC score	3
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	53 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	496 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	hematopoietic progenitor cell
Clone/Individual
Strain
Genotype
Construct	siRNA NelfB

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	isolated from peripheral blood of healthy volunteers
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	75
Read depth after trimming	30,448,097
Duplication proportion	0.78495
Proportion reads mapped	0.7999
Exon/intron ratio	1.78517
Unique read proportion	0.36545

**Bidirectionals**
Total # Tfit bidirectionals	17522
# Promoter Tfit bidirectionals	1969
# Intronic Tfit bidirectionals	11306
# Intergenic Tfit bidirectionals	3070
Total # dREG bidirectionals	11587
# Promoter dREG bidirectionals	1988
# Intronic dREG bidirectionals	7053
# Intergenic dREG bidirectionals	2207
Part of Tfit master merge?	True
Part of dREG master merge?	True