DBNascent | Samples

SRR5633593 Sample ID 778

**Data sources**
Paper identifier	Fleischer2017dna
SRP accession	SRP108366
GEO accession	GSE99508
Samples	SRR5633593

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	36 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	482 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-40 min	0 min	40 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	51
Read depth after trimming	8,528,767
Duplication proportion	0.46393
Proportion reads mapped	0.8542
Exon/intron ratio	2.05245
Unique read proportion	0.50478

**Bidirectionals**
Total # Tfit bidirectionals	14990
# Promoter Tfit bidirectionals	7351
# Intronic Tfit bidirectionals	5652
# Intergenic Tfit bidirectionals	2073
Total # dREG bidirectionals	11212
# Promoter dREG bidirectionals	7325
# Intronic dREG bidirectionals	3249
# Intergenic dREG bidirectionals	1202
Part of Tfit master merge?	True
Part of dREG master merge?	True