Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR5633599 Sample ID 784
| Paper identifier | Fleischer2017dna |
| SRP accession | SRP108366 |
| GEO accession | GSE99508 |
| Samples | SRR5633599 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | estradiol (100 nM) | -40 min | 0 min | 40 min |
| treatment | hydroxytamoxifen (1 microM) | -40 min | 0 min | 40 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 10,937,997 |
| Duplication proportion | 0.3078 |
| Proportion reads mapped | 0.8966 |
| Exon/intron ratio | 2.34447 |
| Unique read proportion | 0.69482 |
| Total # Tfit bidirectionals | 21075 |
| # Promoter Tfit bidirectionals | 9911 |
| # Intronic Tfit bidirectionals | 7991 |
| # Intergenic Tfit bidirectionals | 3323 |
| Total # dREG bidirectionals | 14561 |
| # Promoter dREG bidirectionals | 8142 |
| # Intronic dREG bidirectionals | 4896 |
| # Intergenic dREG bidirectionals | 1924 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |