DBNascent | Samples

SRR5655668 Sample ID 2438

**Data sources**
Paper identifier	Tastemel2017transcription
SRP accession	SRP108750
GEO accession	GSE99747
Samples	SRR5655668

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	53 Mb
Stranded gene read counts	TXT file	925 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	E14
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	35
Read depth after trimming	50,866,618
Duplication proportion	0.86057
Proportion reads mapped	0.7601
Exon/intron ratio	3.5021
Unique read proportion	0.30873

**Bidirectionals**
Total # Tfit bidirectionals	12772
# Promoter Tfit bidirectionals	1035
# Intronic Tfit bidirectionals	6296
# Intergenic Tfit bidirectionals	3383
Total # dREG bidirectionals	29163
# Promoter dREG bidirectionals	1780
# Intronic dREG bidirectionals	15224
# Intergenic dREG bidirectionals	7491
Part of Tfit master merge?	True
Part of dREG master merge?	True