DBNascent | Samples

SRR574824 Sample ID 2291

**Data sources**
Paper identifier	Sigova2013divergent
SRP accession	SRP015819
GEO accession	GSE41009
Samples	SRR574824

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	164 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	ESC
Clone/Individual	H1
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	All cells maintained in mTESR1 medium
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	101
Read depth after trimming	64,300,039
Duplication proportion	0.57286
Proportion reads mapped	0.8599
Exon/intron ratio	2.91182
Unique read proportion	0.68307

**Bidirectionals**
Total # Tfit bidirectionals	51369
# Promoter Tfit bidirectionals	14487
# Intronic Tfit bidirectionals	21263
# Intergenic Tfit bidirectionals	13787
Total # dREG bidirectionals	42444
# Promoter dREG bidirectionals	11364
# Intronic dREG bidirectionals	16212
# Intergenic dREG bidirectionals	13679
Part of Tfit master merge?	True
Part of dREG master merge?	True