DBNascent | Samples

SRR574825 Sample ID 2292

**Data sources**
Paper identifier	Sigova2013divergent
SRP accession	SRP015819
GEO accession	GSE41009
Samples	SRR574825

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	126 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	ESC
Clone/Individual	H1
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	All cells maintained in mTESR1 medium
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	72,941,417
Duplication proportion	0.68585
Proportion reads mapped	0.6873
Exon/intron ratio	4.47584
Unique read proportion	0.60841

**Bidirectionals**
Total # Tfit bidirectionals	45349
# Promoter Tfit bidirectionals	16530
# Intronic Tfit bidirectionals	17731
# Intergenic Tfit bidirectionals	9711
Total # dREG bidirectionals	35955
# Promoter dREG bidirectionals	10584
# Intronic dREG bidirectionals	13167
# Intergenic dREG bidirectionals	9984
Part of Tfit master merge?	True
Part of dREG master merge?	True