DBNascent | Samples

SRR579293 Sample ID 559

**Data sources**
Paper identifier	Danko2013signaling
SRP accession	SRP015987
GEO accession	GSE41323
Samples	SRR579293

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	84 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	AC16
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	43
Read depth after trimming	21,543,740
Duplication proportion	0.29856
Proportion reads mapped	0.8315
Exon/intron ratio	2.45627
Unique read proportion	0.74155

**Bidirectionals**
Total # Tfit bidirectionals	40803
# Promoter Tfit bidirectionals	15446
# Intronic Tfit bidirectionals	16789
# Intergenic Tfit bidirectionals	8779
Total # dREG bidirectionals	25920
# Promoter dREG bidirectionals	9408
# Intronic dREG bidirectionals	10698
# Intergenic dREG bidirectionals	5949
Part of Tfit master merge?	True
Part of dREG master merge?	True