DBNascent | Samples

SRR579294 Sample ID 560

**Data sources**
Paper identifier	Danko2013signaling
SRP accession	SRP015987
GEO accession	GSE41323
Samples	SRR579294

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	91 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	AC16
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	43
Read depth after trimming	23,182,200
Duplication proportion	0.29562
Proportion reads mapped	0.867
Exon/intron ratio	2.07443
Unique read proportion	0.76177

**Bidirectionals**
Total # Tfit bidirectionals	45412
# Promoter Tfit bidirectionals	12388
# Intronic Tfit bidirectionals	21592
# Intergenic Tfit bidirectionals	10131
Total # dREG bidirectionals	26676
# Promoter dREG bidirectionals	8495
# Intronic dREG bidirectionals	11287
# Intergenic dREG bidirectionals	6730
Part of Tfit master merge?	True
Part of dREG master merge?	True