DBNascent | Samples

SRR579296 Sample ID 562

**Data sources**
Paper identifier	Danko2013signaling
SRP	SRP015987
Samples	SRR579296

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	69 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	840 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	AC16
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	TNF-alpha (25 ng/mL)	-10 min	0 min	10 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	38
Read depth after trimming	17,926,564
Duplication proportion	0.36843
Proportion reads mapped	0.8586
Exon/intron ratio	2.70813
Unique read proportion	0.683

**Bidirectionals**
Total # Tfit bidirectionals	36709
# Promoter Tfit bidirectionals	9005
# Intronic Tfit bidirectionals	19089
# Intergenic Tfit bidirectionals	7075
Total # dREG bidirectionals	19467
# Promoter dREG bidirectionals	7182
# Intronic dREG bidirectionals	8204
# Intergenic dREG bidirectionals	3854
Part of Tfit master merge?	True
Part of dREG master merge?	True