DBNascent | Samples

SRR5799635 Sample ID 1942

**Data sources**
Paper identifier	Nilson2017oxidative
SRP accession	SRP110984
GEO accession	GSE100740
Samples	SRR5799635

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	108 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	825 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO (0.1%)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	151
Read depth after trimming	48,897,566
Duplication proportion	0.46144
Proportion reads mapped	0.6588
Exon/intron ratio	3.00453
Unique read proportion	0.50716

**Bidirectionals**
Total # Tfit bidirectionals	26316
# Promoter Tfit bidirectionals	12316
# Intronic Tfit bidirectionals	10013
# Intergenic Tfit bidirectionals	4406
Total # dREG bidirectionals	19080
# Promoter dREG bidirectionals	9100
# Intronic dREG bidirectionals	7092
# Intergenic dREG bidirectionals	3202
Part of Tfit master merge?	True
Part of dREG master merge?	True