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SRR5799635 Sample ID 1942
| Paper identifier | Nilson2017oxidative |
| SRP accession | SRP110984 |
| GEO accession | GSE100740 |
| Samples | SRR5799635 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HeLa |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO (0.1%) | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 151 |
| Read depth after trimming | 48,897,566 |
| Duplication proportion | 0.46144 |
| Proportion reads mapped | 0.6588 |
| Exon/intron ratio | 3.00453 |
| Unique read proportion | 0.50716 |
| Total # Tfit bidirectionals | 26316 |
| # Promoter Tfit bidirectionals | 12316 |
| # Intronic Tfit bidirectionals | 10013 |
| # Intergenic Tfit bidirectionals | 4406 |
| Total # dREG bidirectionals | 19080 |
| # Promoter dREG bidirectionals | 9100 |
| # Intronic dREG bidirectionals | 7092 |
| # Intergenic dREG bidirectionals | 3202 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |