DBNascent | Samples

SRR5799636 Sample ID 1943

**Data sources**
Paper identifier	Nilson2017oxidative
SRP accession	SRP110984
GEO accession	GSE100740
Samples	SRR5799636

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	68 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	927 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	flavopiridol (1 microM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	3
Raw read length	151
Read depth after trimming	41,002,902
Duplication proportion	0.55403
Proportion reads mapped	0.7454
Exon/intron ratio	5.02413
Unique read proportion	0.35218

**Bidirectionals**
Total # Tfit bidirectionals	20723
# Promoter Tfit bidirectionals	10323
# Intronic Tfit bidirectionals	8646
# Intergenic Tfit bidirectionals	2604
Total # dREG bidirectionals	21395
# Promoter dREG bidirectionals	10042
# Intronic dREG bidirectionals	9015
# Intergenic dREG bidirectionals	3053
Part of Tfit master merge?	True
Part of dREG master merge?	True