Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR5799636 Sample ID 1943
| Paper identifier | Nilson2017oxidative |
| SRP accession | SRP110984 |
| GEO accession | GSE100740 |
| Samples | SRR5799636 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HeLa |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | flavopiridol (1 microM) | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 3 |
| Raw read length | 151 |
| Read depth after trimming | 41,002,902 |
| Duplication proportion | 0.55403 |
| Proportion reads mapped | 0.7454 |
| Exon/intron ratio | 5.02413 |
| Unique read proportion | 0.35218 |
| Total # Tfit bidirectionals | 20723 |
| # Promoter Tfit bidirectionals | 10323 |
| # Intronic Tfit bidirectionals | 8646 |
| # Intergenic Tfit bidirectionals | 2604 |
| Total # dREG bidirectionals | 21395 |
| # Promoter dREG bidirectionals | 10042 |
| # Intronic dREG bidirectionals | 9015 |
| # Intergenic dREG bidirectionals | 3053 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |