DBNascent | Samples

SRR5816144 Sample ID 2758

**Data sources**
Paper identifier	Zhang2017hepatic
SRP accession	SRP111487
GEO accession	GSE101115
Samples	SRR5816144

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	96 Mb
Stranded gene read counts	TXT file	921 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	944 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	44
Read depth after trimming	111,853,527
Duplication proportion	0.74866
Proportion reads mapped	0.5424
Exon/intron ratio	1.38571
Unique read proportion	0.30971

**Bidirectionals**
Total # Tfit bidirectionals	18029
# Promoter Tfit bidirectionals	5976
# Intronic Tfit bidirectionals	6881
# Intergenic Tfit bidirectionals	3330
Total # dREG bidirectionals	21888
# Promoter dREG bidirectionals	8354
# Intronic dREG bidirectionals	8316
# Intergenic dREG bidirectionals	3724
Part of Tfit master merge?	True
Part of dREG master merge?	True