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SRR5816144 Sample ID 2758
| Paper identifier | Zhang2017hepatic |
| SRP accession | SRP111487 |
| GEO accession | GSE101115 |
| Samples | SRR5816144 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 96 Mb |
| Stranded gene read counts | TXT file | 921 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 944 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | liver |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 44 |
| Read depth after trimming | 111,853,527 |
| Duplication proportion | 0.74866 |
| Proportion reads mapped | 0.5424 |
| Exon/intron ratio | 1.38571 |
| Unique read proportion | 0.30971 |
| Total # Tfit bidirectionals | 18029 |
| # Promoter Tfit bidirectionals | 5976 |
| # Intronic Tfit bidirectionals | 6881 |
| # Intergenic Tfit bidirectionals | 3330 |
| Total # dREG bidirectionals | 21888 |
| # Promoter dREG bidirectionals | 8354 |
| # Intronic dREG bidirectionals | 8316 |
| # Intergenic dREG bidirectionals | 3724 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |