DBNascent | Samples

SRR5816145 Sample ID 2759

**Data sources**
Paper identifier	Zhang2017hepatic
SRP accession	SRP111487
GEO accession	GSE101115
Samples	SRR5816145

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	123 Mb
Stranded gene read counts	TXT file	923 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain
Genotype	Rora fl/fl; Rorc fl/fl; AAV-TBG-Cre
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Referred to as LDKO (liver-specific double Ror knockout)
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	44
Read depth after trimming	99,040,067
Duplication proportion	0.54685
Proportion reads mapped	0.4552
Exon/intron ratio	2.15794
Unique read proportion	0.54209

**Bidirectionals**
Total # Tfit bidirectionals	18701
# Promoter Tfit bidirectionals	7205
# Intronic Tfit bidirectionals	6199
# Intergenic Tfit bidirectionals	3921
Total # dREG bidirectionals	24197
# Promoter dREG bidirectionals	8655
# Intronic dREG bidirectionals	9542
# Intergenic dREG bidirectionals	4536
Part of Tfit master merge?	True
Part of dREG master merge?	True