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SRR5816145 Sample ID 2759
| Paper identifier | Zhang2017hepatic |
| SRP accession | SRP111487 |
| GEO accession | GSE101115 |
| Samples | SRR5816145 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 123 Mb |
| Stranded gene read counts | TXT file | 923 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | liver |
| Clone/Individual | |
| Strain | |
| Genotype | Rora fl/fl; Rorc fl/fl; AAV-TBG-Cre |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Referred to as LDKO (liver-specific double Ror knockout) |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 44 |
| Read depth after trimming | 99,040,067 |
| Duplication proportion | 0.54685 |
| Proportion reads mapped | 0.4552 |
| Exon/intron ratio | 2.15794 |
| Unique read proportion | 0.54209 |
| Total # Tfit bidirectionals | 18701 |
| # Promoter Tfit bidirectionals | 7205 |
| # Intronic Tfit bidirectionals | 6199 |
| # Intergenic Tfit bidirectionals | 3921 |
| Total # dREG bidirectionals | 24197 |
| # Promoter dREG bidirectionals | 8655 |
| # Intronic dREG bidirectionals | 9542 |
| # Intergenic dREG bidirectionals | 4536 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |