DBNascent | Samples

SRR5835187 Sample ID 883

**Data sources**
Paper identifier	Gao2018jmjd6
SRP accession	SRP112707
GEO accession	GSE101560
Samples	SRR5835187

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	73 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	431 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	31,343,577
Duplication proportion	0.65412
Proportion reads mapped	0.9488
Exon/intron ratio	4.01135
Unique read proportion	0.36987

**Bidirectionals**
Total # Tfit bidirectionals	14476
# Promoter Tfit bidirectionals	7016
# Intronic Tfit bidirectionals	5456
# Intergenic Tfit bidirectionals	1504
Total # dREG bidirectionals	10011
# Promoter dREG bidirectionals	5579
# Intronic dREG bidirectionals	3173
# Intergenic dREG bidirectionals	1297
Part of Tfit master merge?	True
Part of dREG master merge?	True