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SRR5905149 Sample ID 309
| Paper identifier | Booth2018cdk9 |
| SRP accession | SRP114939 |
| GEO accession | GSE102308 |
| Samples | SRR5905149 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | other |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 19 Mb |
| Organism | S. pombe |
| Sample type | organism |
| Cell type | whole yeast |
| Clone/Individual | |
| Strain | CS118 (Isk1as) |
| Genotype | lsk1F353G::kanMX6 leu1-32 ura4-D18 his3-D1 ade6-M216 h- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -5 min | 0 min | 5 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 4 |
| Raw read length | 76 |
| Read depth after trimming | 31,598,826 |
| Duplication proportion | 0.84749 |
| Proportion reads mapped | 0.5931 |
| Exon/intron ratio | 7.56601 |
| Unique read proportion | 0.18203 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |