DBNascent | Samples

SRR5905169 Sample ID 329

**Data sources**
Paper identifier	Booth2018cdk9
SRP accession	SRP114939
GEO accession	GSE102308
Samples	SRR5905169

**Technical details**
QC score	4
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	other
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	9 Mb
Stranded gene read counts	TXT file
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	S. pombe
Sample type	organism
Cell type	whole yeast
Clone/Individual
Strain	LV7 (cdk9as)
Genotype	cdk9T120G::kanMX6 leu1-32 ura4-D18 his3-D1 ade6-M210 h+
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	3MB-PP1 (10 microM)	-10 min	0 min	10 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	76
Read depth after trimming	6,939,159
Duplication proportion	0.73235
Proportion reads mapped	0.6372
Exon/intron ratio	4.87629
Unique read proportion	0.1936

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False