DBNascent | Samples

SRR592725 Sample ID 2204

**Data sources**
Paper identifier	Saunders2013extensive
SRP accession	SRP016138
GEO accession	GSE41611
Samples	SRR592725

**Technical details**
QC score	5
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	28 Mb
Stranded gene read counts	TXT file	716 Kb
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	D. melanogaster
Sample type	tissue
Cell type	embryo
Clone/Individual
Strain	yellow-white
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	gestation	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Library prep not specified - just "same as Core 2008"
Analysis notes

**Sample metrics**
Sample QC score	5
Sample NRO score	1
Raw read length	46
Read depth after trimming	4,677,369
Duplication proportion	0.46513
Proportion reads mapped	0.6722
Exon/intron ratio	1.79672
Unique read proportion	0.41748

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False