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SRR592725 Sample ID 2204
| Paper identifier | Saunders2013extensive |
| SRP accession | SRP016138 |
| GEO accession | GSE41611 |
| Samples | SRR592725 |
| QC score | 5 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 28 Mb |
| Stranded gene read counts | TXT file | 716 Kb |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | tissue |
| Cell type | embryo |
| Clone/Individual | |
| Strain | yellow-white |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | gestation | -2 hr | 0 hr | 2 hr |
| Pipeline info and software versions | |
| Sample notes | Library prep not specified - just "same as Core 2008" |
| Analysis notes |
| Sample QC score | 5 |
| Sample NRO score | 1 |
| Raw read length | 46 |
| Read depth after trimming | 4,677,369 |
| Duplication proportion | 0.46513 |
| Proportion reads mapped | 0.6722 |
| Exon/intron ratio | 1.79672 |
| Unique read proportion | 0.41748 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |