DBNascent | Samples

SRR5944047 Sample ID 2107

**Data sources**
Paper identifier	Rahnamoun2017mutant
SRP accession	SRP115797
GEO accession	GSE102796
Samples	SRR5944047

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	76 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	801 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	SW480
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	50
Read depth after trimming	24,177,244
Duplication proportion	0.41269
Proportion reads mapped	0.8105
Exon/intron ratio	3.11774
Unique read proportion	0.60857

**Bidirectionals**
Total # Tfit bidirectionals	31352
# Promoter Tfit bidirectionals	11841
# Intronic Tfit bidirectionals	12653
# Intergenic Tfit bidirectionals	5748
Total # dREG bidirectionals	18538
# Promoter dREG bidirectionals	7963
# Intronic dREG bidirectionals	6539
# Intergenic dREG bidirectionals	3881
Part of Tfit master merge?	True
Part of dREG master merge?	True