DBNascent | Samples

SRR5944048 Sample ID 2108

**Data sources**
Paper identifier	Rahnamoun2017mutant
SRP accession	SRP115797
GEO accession	GSE102796
Samples	SRR5944048

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	59 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	619 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	SW480
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	17,613,939
Duplication proportion	0.41205
Proportion reads mapped	0.8331
Exon/intron ratio	3.04867
Unique read proportion	0.59811

**Bidirectionals**
Total # Tfit bidirectionals	25370
# Promoter Tfit bidirectionals	10361
# Intronic Tfit bidirectionals	10288
# Intergenic Tfit bidirectionals	4205
Total # dREG bidirectionals	14357
# Promoter dREG bidirectionals	6982
# Intronic dREG bidirectionals	4713
# Intergenic dREG bidirectionals	2732
Part of Tfit master merge?	True
Part of dREG master merge?	True