DBNascent | Samples

SRR6008470 Sample ID 1399

**Data sources**
Paper identifier	Kuosmanen2018nrf2
SRP accession	SRP117047
GEO accession	GSE103530
Samples	SRR6008470

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	56 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	715 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HUVEC
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	oxPAPC (30 microg/mL)	-6 hr	0 hr	6 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	12,410,810
Duplication proportion	0.31957
Proportion reads mapped	0.9229
Exon/intron ratio	2.44444
Unique read proportion	0.69136

**Bidirectionals**
Total # Tfit bidirectionals	24144
# Promoter Tfit bidirectionals	9702
# Intronic Tfit bidirectionals	10409
# Intergenic Tfit bidirectionals	4348
Total # dREG bidirectionals	16626
# Promoter dREG bidirectionals	7630
# Intronic dREG bidirectionals	6494
# Intergenic dREG bidirectionals	2763
Part of Tfit master merge?	True
Part of dREG master merge?	True