DBNascent | Samples

SRR6026782 Sample ID 2681

**Data sources**
Paper identifier	Woo2018ted
SRP accession	SRP117282
GEO accession	GSE103719
Samples	SRR6026782

**Technical details**
QC score	1
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	104 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	885 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Methods cited Kwak et al with no additional detail
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	24
Read depth after trimming	25,050,838
Duplication proportion	0.22322
Proportion reads mapped	0.9692
Exon/intron ratio	4.41337
Unique read proportion	0.84292

**Bidirectionals**
Total # Tfit bidirectionals	32106
# Promoter Tfit bidirectionals	17107
# Intronic Tfit bidirectionals	11884
# Intergenic Tfit bidirectionals	4001
Total # dREG bidirectionals	20042
# Promoter dREG bidirectionals	8864
# Intronic dREG bidirectionals	8175
# Intergenic dREG bidirectionals	2504
Part of Tfit master merge?	True
Part of dREG master merge?	True