DBNascent | Samples

SRR6026783 Sample ID 2682

**Data sources**
Paper identifier	Woo2018ted
SRP accession	SRP117282
GEO accession	GSE103719
Samples	SRR6026783

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	191 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	thapsigargin (2 microM)	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Methods cited Kwak et al with no additional detail
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	24
Read depth after trimming	50,020,103
Duplication proportion	0.25348
Proportion reads mapped	0.9672
Exon/intron ratio	4.77306
Unique read proportion	0.85641

**Bidirectionals**
Total # Tfit bidirectionals	37152
# Promoter Tfit bidirectionals	19868
# Intronic Tfit bidirectionals	12712
# Intergenic Tfit bidirectionals	5642
Total # dREG bidirectionals	24123
# Promoter dREG bidirectionals	8028
# Intronic dREG bidirectionals	10425
# Intergenic dREG bidirectionals	4248
Part of Tfit master merge?	True
Part of dREG master merge?	True