DBNascent | Samples

SRR6026784 Sample ID 2683

**Data sources**
Paper identifier	Woo2018ted
SRP accession	SRP117282
GEO accession	GSE103719
Samples	SRR6026784

**Technical details**
QC score	1
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	218 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	thapsigargin (2 microM)	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Methods cited Kwak et al with no additional detail
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	3
Raw read length	24
Read depth after trimming	59,670,588
Duplication proportion	0.27864
Proportion reads mapped	0.9591
Exon/intron ratio	5.20563
Unique read proportion	0.84643

**Bidirectionals**
Total # Tfit bidirectionals	40879
# Promoter Tfit bidirectionals	20661
# Intronic Tfit bidirectionals	14116
# Intergenic Tfit bidirectionals	7231
Total # dREG bidirectionals	28263
# Promoter dREG bidirectionals	7900
# Intronic dREG bidirectionals	12771
# Intergenic dREG bidirectionals	5852
Part of Tfit master merge?	True
Part of dREG master merge?	True