Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR6069044 Sample ID 1982
| Paper identifier | Oh2021enhancer |
| SRP accession | SRP118797 |
| GEO accession | |
| Samples | SRR6069044 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | siRNA Kdm5c |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Previous identifier until 6/16/21 was Oh2020unpublished, documentation reflects that |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 30,986,028 |
| Duplication proportion | 0.66267 |
| Proportion reads mapped | 0.9221 |
| Exon/intron ratio | 3.70265 |
| Unique read proportion | 0.36767 |
| Total # Tfit bidirectionals | 23588 |
| # Promoter Tfit bidirectionals | 11068 |
| # Intronic Tfit bidirectionals | 8912 |
| # Intergenic Tfit bidirectionals | 3817 |
| Total # dREG bidirectionals | 18057 |
| # Promoter dREG bidirectionals | 8920 |
| # Intronic dREG bidirectionals | 6274 |
| # Intergenic dREG bidirectionals | 3171 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |