DBNascent | Samples

SRR6069044 Sample ID 1982

**Data sources**
Paper identifier	Oh2021enhancer
SRP accession	SRP118797
GEO accession
Samples	SRR6069044

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	70 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	781 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA Kdm5c

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Previous identifier until 6/16/21 was Oh2020unpublished, documentation reflects that

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	30,986,028
Duplication proportion	0.66267
Proportion reads mapped	0.9221
Exon/intron ratio	3.70265
Unique read proportion	0.36767

**Bidirectionals**
Total # Tfit bidirectionals	23588
# Promoter Tfit bidirectionals	11068
# Intronic Tfit bidirectionals	8912
# Intergenic Tfit bidirectionals	3817
Total # dREG bidirectionals	18057
# Promoter dREG bidirectionals	8920
# Intronic dREG bidirectionals	6274
# Intergenic dREG bidirectionals	3171
Part of Tfit master merge?	True
Part of dREG master merge?	True