DBNascent | Samples

SRR6069045 Sample ID 1983

**Data sources**
Paper identifier	Oh2021enhancer
SRP accession	SRP118797
GEO accession
Samples	SRR6069045

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	71 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	655 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA Kdm5c

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Previous identifier until 6/16/21 was Oh2020unpublished, documentation reflects that

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	26,713,484
Duplication proportion	0.60372
Proportion reads mapped	0.9264
Exon/intron ratio	3.08249
Unique read proportion	0.43669

**Bidirectionals**
Total # Tfit bidirectionals	20575
# Promoter Tfit bidirectionals	9728
# Intronic Tfit bidirectionals	7794
# Intergenic Tfit bidirectionals	3167
Total # dREG bidirectionals	15150
# Promoter dREG bidirectionals	7777
# Intronic dREG bidirectionals	5119
# Intergenic dREG bidirectionals	2535
Part of Tfit master merge?	True
Part of dREG master merge?	True