DBNascent | Samples

SRR6128875 Sample ID 2501

**Data sources**
Paper identifier	Trizzino2018tumor
SRP accession	SRP119318
GEO accession	GSE104545
Samples	SRR6128875

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	62 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	448 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	RMG1
Clone/Individual
Strain
Genotype
Construct	dox-inducible shRNA Arid1A

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (2 microg/mL)	-3 day	0 day	3 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	76
Read depth after trimming	118,572,449
Duplication proportion	0.83655
Proportion reads mapped	0.4367
Exon/intron ratio	4.69286
Unique read proportion	0.20563

**Bidirectionals**
Total # Tfit bidirectionals	17891
# Promoter Tfit bidirectionals	4738
# Intronic Tfit bidirectionals	8416
# Intergenic Tfit bidirectionals	3455
Total # dREG bidirectionals	10383
# Promoter dREG bidirectionals	3561
# Intronic dREG bidirectionals	4582
# Intergenic dREG bidirectionals	2377
Part of Tfit master merge?	True
Part of dREG master merge?	True