DBNascent | Samples

SRR6145793 Sample ID 2503

**Data sources**
Paper identifier	Trizzino2018tumor
SRP accession	SRP119318
GEO accession	GSE104545
Samples	SRR6145793

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	14 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	68 Kb
dREG bidirectional regions	BED file	27 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	RMG1
Clone/Individual
Strain
Genotype
Construct	dox-inducible shRNA Arid1A

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (2 microg/mL)	-3 day	0 day	3 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	76
Read depth after trimming	24,651,034
Duplication proportion	0.91734
Proportion reads mapped	0.2773
Exon/intron ratio	3.43103
Unique read proportion	0.07873

**Bidirectionals**
Total # Tfit bidirectionals	771
# Promoter Tfit bidirectionals	74
# Intronic Tfit bidirectionals	254
# Intergenic Tfit bidirectionals	63
Total # dREG bidirectionals	619
# Promoter dREG bidirectionals	80
# Intronic dREG bidirectionals	237
# Intergenic dREG bidirectionals	101
Part of Tfit master merge?	True
Part of dREG master merge?	True