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SRR6145793 Sample ID 2503
| Paper identifier | Trizzino2018tumor |
| SRP accession | SRP119318 |
| GEO accession | GSE104545 |
| Samples | SRR6145793 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 14 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 68 Kb |
| dREG bidirectional regions | BED file | 27 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | RMG1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | dox-inducible shRNA Arid1A |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline (2 microg/mL) | -3 day | 0 day | 3 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 3 |
| Raw read length | 76 |
| Read depth after trimming | 24,651,034 |
| Duplication proportion | 0.91734 |
| Proportion reads mapped | 0.2773 |
| Exon/intron ratio | 3.43103 |
| Unique read proportion | 0.07873 |
| Total # Tfit bidirectionals | 771 |
| # Promoter Tfit bidirectionals | 74 |
| # Intronic Tfit bidirectionals | 254 |
| # Intergenic Tfit bidirectionals | 63 |
| Total # dREG bidirectionals | 619 |
| # Promoter dREG bidirectionals | 80 |
| # Intronic dREG bidirectionals | 237 |
| # Intergenic dREG bidirectionals | 101 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |