DBNascent | Samples

SRR618503 Sample ID 2213

**Data sources**
Paper identifier	Schaaf2013genome
SRP accession	SRP017251
GEO accession	GSE42397
Samples	SRR618503

**Technical details**
QC score	3
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	61 Mb
Stranded gene read counts	TXT file	726 Kb
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	D. melanogaster
Sample type	cell line
Cell type	ML-DmBG3-c2
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dsRNA Nipped-B (10 microg/well)	None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	No time of treatment unspecified; Cites Kwak2013precise, but no specific library prep
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	27,349,781
Duplication proportion	0.73172
Proportion reads mapped	0.8083
Exon/intron ratio	2.22394
Unique read proportion	0.31896

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False