DBNascent | Samples

SRR620530 Sample ID 1001

**Data sources**
Paper identifier	Hu2012dicer
SRP accession	SRP017330
GEO accession	GSE42563
Samples	SRR620530

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	31 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	636 Kb
dREG bidirectional regions	BED file	177 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	NTera2/D1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	48
Read depth after trimming	8,804,069
Duplication proportion	0.63267
Proportion reads mapped	0.733
Exon/intron ratio	2.9375
Unique read proportion	0.33778

**Bidirectionals**
Total # Tfit bidirectionals	7326
# Promoter Tfit bidirectionals	3246
# Intronic Tfit bidirectionals	2784
# Intergenic Tfit bidirectionals	1099
Total # dREG bidirectionals	4123
# Promoter dREG bidirectionals	2499
# Intronic dREG bidirectionals	1030
# Intergenic dREG bidirectionals	724
Part of Tfit master merge?	True
Part of dREG master merge?	True