DBNascent | Samples

SRR620531 Sample ID 1002

**Data sources**
Paper identifier	Hu2012dicer
SRP	SRP017330
Samples	SRR620531

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	105 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	754 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	NTera2/D1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	retinoic acid (1 microM)	-2 day	0 day	2 day

**Extended notes**
Pipeline info and software versions
Sample notes	all-trans retinoic acid
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	48
Read depth after trimming	28,748,492
Duplication proportion	0.3544
Proportion reads mapped	0.8314
Exon/intron ratio	2.1024
Unique read proportion	0.72362

**Bidirectionals**
Total # Tfit bidirectionals	25029
# Promoter Tfit bidirectionals	8348
# Intronic Tfit bidirectionals	10471
# Intergenic Tfit bidirectionals	5968
Total # dREG bidirectionals	17493
# Promoter dREG bidirectionals	6749
# Intronic dREG bidirectionals	6543
# Intergenic dREG bidirectionals	4350
Part of Tfit master merge?	True
Part of dREG master merge?	True