DBNascent | Samples

SRR6205688 Sample ID 2239

**Data sources**
Paper identifier	Sen2019histone
SRP accession	SRP121032
GEO accession	GSE105936
Samples	SRR6205688

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	93 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	IMR90
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	3
Raw read length	35
Read depth after trimming	35,958,834
Duplication proportion	0.57806
Proportion reads mapped	0.8545
Exon/intron ratio	5.2776
Unique read proportion	0.54854

**Bidirectionals**
Total # Tfit bidirectionals	57966
# Promoter Tfit bidirectionals	14375
# Intronic Tfit bidirectionals	28309
# Intergenic Tfit bidirectionals	15113
Total # dREG bidirectionals	46920
# Promoter dREG bidirectionals	9428
# Intronic dREG bidirectionals	23965
# Intergenic dREG bidirectionals	12350
Part of Tfit master merge?	True
Part of dREG master merge?	True