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SRR6205689 Sample ID 2240
| Paper identifier | Sen2019histone |
| SRP accession | SRP121032 |
| GEO accession | GSE105936 |
| Samples | SRR6205689 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 85 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | IMR90 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | replicatively passaging until senescent | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 35 |
| Read depth after trimming | 31,040,368 |
| Duplication proportion | 0.55685 |
| Proportion reads mapped | 0.8556 |
| Exon/intron ratio | 3.52784 |
| Unique read proportion | 0.55314 |
| Total # Tfit bidirectionals | 43427 |
| # Promoter Tfit bidirectionals | 10710 |
| # Intronic Tfit bidirectionals | 21625 |
| # Intergenic Tfit bidirectionals | 10998 |
| Total # dREG bidirectionals | 38590 |
| # Promoter dREG bidirectionals | 9163 |
| # Intronic dREG bidirectionals | 19254 |
| # Intergenic dREG bidirectionals | 9855 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |