DBNascent | Samples

SRR6216708 Sample ID 254

**Data sources**
Paper identifier	Birkenheuer2018herpes
SRP accession	SRP121447
GEO accession	GSE106126
Samples	SRR6216708

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	110 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	800 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEp2
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	HSV-1 (MOI 5)	-3 hr	0 hr	3 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	76
Read depth after trimming	44,178,047
Duplication proportion	0.48623
Proportion reads mapped	0.7345
Exon/intron ratio	3.87163
Unique read proportion	0.56071

**Bidirectionals**
Total # Tfit bidirectionals	30384
# Promoter Tfit bidirectionals	13040
# Intronic Tfit bidirectionals	11892
# Intergenic Tfit bidirectionals	4935
Total # dREG bidirectionals	18254
# Promoter dREG bidirectionals	6549
# Intronic dREG bidirectionals	7172
# Intergenic dREG bidirectionals	3476
Part of Tfit master merge?	True
Part of dREG master merge?	True