DBNascent | Samples

SRR6246979 Sample ID 536

**Data sources**
Paper identifier	Czimmerer2018transcription
SRP accession	SRP123511
GEO accession	GSE106703
Samples	SRR6246979

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	31 Mb
Stranded gene read counts	TXT file	913 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	712 Kb
dREG bidirectional regions	BED file	343 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	bone marrow derived macrophage
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	interleukin-4 (20 ng/mL)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	37
Read depth after trimming	35,810,180
Duplication proportion	0.88888
Proportion reads mapped	0.7314
Exon/intron ratio	2.33099
Unique read proportion	0.20185

**Bidirectionals**
Total # Tfit bidirectionals	8329
# Promoter Tfit bidirectionals	3697
# Intronic Tfit bidirectionals	2719
# Intergenic Tfit bidirectionals	616
Total # dREG bidirectionals	7963
# Promoter dREG bidirectionals	4405
# Intronic dREG bidirectionals	1958
# Intergenic dREG bidirectionals	552
Part of Tfit master merge?	True
Part of dREG master merge?	True