DBNascent | Samples

SRR6247018 Sample ID 537

**Data sources**
Paper identifier	Czimmerer2018transcription
SRP accession	SRP123511
GEO accession	GSE106703
Samples	SRR6247018

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	22 Mb
Stranded gene read counts	TXT file	913 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	358 Kb
dREG bidirectional regions	BED file	171 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	bone marrow derived macrophage
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	35
Read depth after trimming	36,641,625
Duplication proportion	0.9405
Proportion reads mapped	0.7227
Exon/intron ratio	2.2317
Unique read proportion	0.12465

**Bidirectionals**
Total # Tfit bidirectionals	4185
# Promoter Tfit bidirectionals	1852
# Intronic Tfit bidirectionals	1342
# Intergenic Tfit bidirectionals	192
Total # dREG bidirectionals	3984
# Promoter dREG bidirectionals	2319
# Intronic dREG bidirectionals	934
# Intergenic dREG bidirectionals	229
Part of Tfit master merge?	True
Part of dREG master merge?	True