DBNascent | Samples

SRR6347629 Sample ID 1906

**Data sources**
Paper identifier	Nair2019phase
SRP accession	SRP108498
GEO accession	GSE99539
Samples	SRR6347629

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	91 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	764 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-30 min	0 min	30 min
treatment	2,5-hexanediol (8.5 percent)	-35 min	-30 min	5 min

**Extended notes**
Pipeline info and software versions
Sample notes	Methods unclear in spots - treatments may not be accurate
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	75
Read depth after trimming	27,142,984
Duplication proportion	0.39924
Proportion reads mapped	0.8838
Exon/intron ratio	2.75157
Unique read proportion	0.64281

**Bidirectionals**
Total # Tfit bidirectionals	24380
# Promoter Tfit bidirectionals	10099
# Intronic Tfit bidirectionals	10163
# Intergenic Tfit bidirectionals	3728
Total # dREG bidirectionals	17580
# Promoter dREG bidirectionals	8081
# Intronic dREG bidirectionals	6779
# Intergenic dREG bidirectionals	2939
Part of Tfit master merge?	True
Part of dREG master merge?	True