DBNascent | Samples

SRR639050 Sample ID 1076

**Data sources**
Paper identifier	Jin2013high
SRP accession	SRP017631
GEO accession	GSE43070
Samples	SRR639050

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	195 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	IMR90
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	43
Read depth after trimming	76,503,567
Duplication proportion	0.53633
Proportion reads mapped	0.8871
Exon/intron ratio	3.32336
Unique read proportion	0.58489

**Bidirectionals**
Total # Tfit bidirectionals	41480
# Promoter Tfit bidirectionals	12285
# Intronic Tfit bidirectionals	16395
# Intergenic Tfit bidirectionals	12334
Total # dREG bidirectionals	37022
# Promoter dREG bidirectionals	8772
# Intronic dREG bidirectionals	17687
# Intergenic dREG bidirectionals	9919
Part of Tfit master merge?	True
Part of dREG master merge?	True