DBNascent | Samples

SRR639051 Sample ID 1077

**Data sources**
Paper identifier	Jin2013high
SRP	SRP017631
Samples	SRR639051

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	205 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	IMR90
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	TNF-alpha (10 ng/mL)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	43
Read depth after trimming	81,913,411
Duplication proportion	0.51127
Proportion reads mapped	0.8455
Exon/intron ratio	2.94268
Unique read proportion	0.59119

**Bidirectionals**
Total # Tfit bidirectionals	41078
# Promoter Tfit bidirectionals	13821
# Intronic Tfit bidirectionals	15926
# Intergenic Tfit bidirectionals	11432
Total # dREG bidirectionals	35992
# Promoter dREG bidirectionals	8995
# Intronic dREG bidirectionals	17355
# Intergenic dREG bidirectionals	9304
Part of Tfit master merge?	True
Part of dREG master merge?	True